MLOC_56286 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.760220.734623.38822.5592
LEAShoots from the seedlings (10 cm shoot stage)4.2938510.16069.535566.29569
INF1Young developing inflorescences (5mm)0.48710.8945190.179020.479375
INF2Developing inflorescences (1-1.5 cm)0.4911140.5553220.8070780.655419
ROORoots from the seedlings (10 cm shoot stage)9.872647.7712410.18838.99762
NODDeveloping tillers at six leaf stage, 3rd internode5.183023.824772.48659.32734
CAR5Developing grain, bracts removed (5 DPA)3.840955.148774.783764.50461
CAR15Developing grain, bracts removed (15 DPA)1.900062.059491.526834.65244



CDS Structure of MLOC_56286






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56286.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367532NoneNoneNoneNone
MLOC_56286.2CUST_3582_PI427708080AvailableAvailablecontig_40694 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g10940.1 -1 1e-145 432 295/374 (79%) 13105.m01183 protein metal cation transporter, putative, expressed
TAIR PP10 AT1G10970.1 -1 1e-86 280 196/382 (51%) | Symbols: ZIP4, ATZIP4 | zinc transporter 4 precursor | chr1:3665201-3666933 REVERSE LENGTH=408