MLOC_56278 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains272.378220.833257.949213.239
LEAShoots from the seedlings (10 cm shoot stage)326.91650.602110.32125.858
INF1Young developing inflorescences (5mm)39.686825.304320.731223.5208
INF2Developing inflorescences (1-1.5 cm)50.841671.645479.364766.2967
ROORoots from the seedlings (10 cm shoot stage)133.879106.745141.686106.236
NODDeveloping tillers at six leaf stage, 3rd internode547.54604.284162.791094.57
CAR5Developing grain, bracts removed (5 DPA)215.806203.705176.134175.017
CAR15Developing grain, bracts removed (15 DPA)5.019772.713315.289739.84972



CDS Structure of MLOC_56278






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56278.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250563.1NoneNoneNoneNone
MLOC_56278.2CUST_18135_PI427708080AvailableAvailablecontig_40681 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g16450.1 +1 3e-135 406 218/247 (88%) 13104.m01485 protein aquaporin protein, putative, expressed
TAIR PP10 AT2G16850.1 +1 2e-118 360 194/245 (79%) | Symbols: PIP3B, PIP2;8 | plasma membrane intrinsic protein 2;8 | chr2:7301647-7303180 FORWARD LENGTH=278