MLOC_56273 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.0471940.16389800.145377
LEAShoots from the seedlings (10 cm shoot stage)0.2235070.07820660.06560670.10476
INF1Young developing inflorescences (5mm)0.08168830.2090960.09967630.0943436
INF2Developing inflorescences (1-1.5 cm)0.2348530.3514320.2751540.285105
ROORoots from the seedlings (10 cm shoot stage)00.1888770.4172460.281112
NODDeveloping tillers at six leaf stage, 3rd internode00.03702610.01139840.137536
CAR5Developing grain, bracts removed (5 DPA)0.08784330.08030980.09563750.0700392
CAR15Developing grain, bracts removed (15 DPA)0.08804870.09200160.06420040.175836



CDS Structure of MLOC_56273






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56273.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56273.1NoneAvailableAvailablecontig_40684 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g24050.1 +3 8e-147 348 171/263 (65%) 13112.m02445 protein retrotransposon protein, putative, unclassified, expressed
TAIR PP10 ATMG00860.1 +3 4e-34 127 65/131 (50%) | Symbols: ORF158 | DNA/RNA polymerases superfamily protein | chrM:235916-236392 FORWARD LENGTH=158