MLOC_56270 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.788618.999618.411219.2616
LEAShoots from the seedlings (10 cm shoot stage)18.003416.897616.291414.763
INF1Young developing inflorescences (5mm)31.436834.278834.231228.4057
INF2Developing inflorescences (1-1.5 cm)31.255937.229135.574637.968
ROORoots from the seedlings (10 cm shoot stage)20.045319.721519.375824.8945
NODDeveloping tillers at six leaf stage, 3rd internode14.904418.373627.758866.0386
CAR5Developing grain, bracts removed (5 DPA)24.543126.378324.8824.7083
CAR15Developing grain, bracts removed (15 DPA)11.92689.8275511.519525.2836



CDS Structure of MLOC_56270






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56270.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370244NoneNoneNoneNone
MLOC_56270.1CUST_18134_PI427708080AvailableAvailablecontig_40681 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g15550.2 -2 0.0 677 343/396 (87%) 13102.m12384 protein spermidine synthase, putative, expressed
TAIR PP10 AT5G53120.5 -2 1e-177 511 253/352 (72%) | Symbols: SPDS3, SPMS | spermidine synthase 3 | chr5:21535429-21537653 FORWARD LENGTH=359