- Predicted Gene MLOC_56270
MLOC_56270 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 17.7886 | 18.9996 | 18.4112 | 19.2616 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 18.0034 | 16.8976 | 16.2914 | 14.763 |
INF1 | Young developing inflorescences (5mm) | 31.4368 | 34.2788 | 34.2312 | 28.4057 |
INF2 | Developing inflorescences (1-1.5 cm) | 31.2559 | 37.2291 | 35.5746 | 37.968 |
ROO | Roots from the seedlings (10 cm shoot stage) | 20.0453 | 19.7215 | 19.3758 | 24.8945 |
NOD | Developing tillers at six leaf stage, 3rd internode | 14.9044 | 18.3736 | 27.7588 | 66.0386 |
CAR5 | Developing grain, bracts removed (5 DPA) | 24.5431 | 26.3783 | 24.88 | 24.7083 |
CAR15 | Developing grain, bracts removed (15 DPA) | 11.9268 | 9.82755 | 11.5195 | 25.2836 |
CDS Structure of MLOC_56270
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_56270.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g15550.2 |
-2 |
0.0 |
677 |
343/396 (87%) |
13102.m12384 protein spermidine synthase, putative, expressed |
TAIR PP10 |
AT5G53120.5 |
-2 |
1e-177 |
511 |
253/352 (72%) |
| Symbols: SPDS3, SPMS | spermidine synthase 3 | chr5:21535429-21537653 FORWARD LENGTH=359 |