MLOC_56250 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains40.178131.119727.588832.9381
LEAShoots from the seedlings (10 cm shoot stage)41.9933129.43647.961861.5691
INF1Young developing inflorescences (5mm)00.1188740.2860630.212173
INF2Developing inflorescences (1-1.5 cm)0.1920460.1319750.1669610.19278
ROORoots from the seedlings (10 cm shoot stage)28.262819.231942.392426.5993
NODDeveloping tillers at six leaf stage, 3rd internode284.821454.101757.4931467.07
CAR5Developing grain, bracts removed (5 DPA)1.479051.613761.989721.79745
CAR15Developing grain, bracts removed (15 DPA)0.1909290.05517610.06856570.287718



CDS Structure of MLOC_56250






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56250.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364970NoneNoneNoneNone
MLOC_56250.1CUST_3579_PI427708080AvailableAvailablecontig_40657 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g48180.1 +1 4e-138 403 226/285 (79%) 13106.m05121 protein glycosyl hydrolases family 16, putative, expressed
TAIR PP10 AT4G25810.1 +1 1e-103 314 164/266 (62%) | Symbols: XTR6, XTH23 | xyloglucan endotransglycosylase 6 | chr4:13128694-13129715 FORWARD LENGTH=286