MLOC_56246 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3305660.5811120.4056670.90911
LEAShoots from the seedlings (10 cm shoot stage)0.9055911.066060.5009220.901093
INF1Young developing inflorescences (5mm)1.384181.818461.208341.61816
INF2Developing inflorescences (1-1.5 cm)1.39270.3898342.48432.08947
ROORoots from the seedlings (10 cm shoot stage)0.596030.3223860.8265730.550781
NODDeveloping tillers at six leaf stage, 3rd internode00.7143330.3081193.52611
CAR5Developing grain, bracts removed (5 DPA)1.463131.134880.5187241.64743
CAR15Developing grain, bracts removed (15 DPA)1.439261.329381.397894.41445



CDS Structure of MLOC_56246






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56246.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56246.1CUST_13494_PI427708080AvailableAvailablecontig_406530 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g20270.1 +2 2e-17 79 43/88 (49%) 13111.m02051 protein retrotransposon protein, putative, unclassified
TAIR PP10None-----