MLOC_56208 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.604462.059411.939652.02698
LEAShoots from the seedlings (10 cm shoot stage)4.245265.112316.469393.62407
INF1Young developing inflorescences (5mm)1.678181.214731.534171.24903
INF2Developing inflorescences (1-1.5 cm)1.279221.939491.188271.68144
ROORoots from the seedlings (10 cm shoot stage)9.078343.910593.453484.23473
NODDeveloping tillers at six leaf stage, 3rd internode10.875314.977816.822929.7616
CAR5Developing grain, bracts removed (5 DPA)1.872892.041161.921041.89888
CAR15Developing grain, bracts removed (15 DPA)0.1857650.04158110.1207190.289126



CDS Structure of MLOC_56208






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56208.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56208.1CUST_13491_PI427708080AvailableAvailablecontig_40632 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g46420.1 +2 7e-112 343 214/295 (73%) 13102.m05212 protein transposon protein, putative, unclassified, expressed
TAIR PP10 AT3G60200.1 +2 1e-12 69 101/309 (33%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44600.1); Has 60 Blast hits to 60 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:22249320-22250237 FORWARD LENGTH=305