MLOC_56205 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.012713.429214.648514.5697
LEAShoots from the seedlings (10 cm shoot stage)6.758780.9933711.460242.4736
INF1Young developing inflorescences (5mm)3.518364.933774.114163.86249
INF2Developing inflorescences (1-1.5 cm)2.932083.152513.152593.61603
ROORoots from the seedlings (10 cm shoot stage)10.51139.939338.3711.2155
NODDeveloping tillers at six leaf stage, 3rd internode19.163313.375324.335340.438
CAR5Developing grain, bracts removed (5 DPA)13.374114.799812.354614.3719
CAR15Developing grain, bracts removed (15 DPA)0.1411030.1660220.1587280.429866



CDS Structure of MLOC_56205






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56205.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56205.3CUST_12788_PI427708083AvailableAvailablecontig_40631 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g51280.1 +3 1e-80 265 181/224 (81%) 13102.m05828 protein TCP-domain protein, putative, expressed
TAIR PP10 AT1G69690.1 +3 3e-40 150 82/126 (65%) TCP family transcription factor | chr1:26216449-26217426 FORWARD LENGTH=325