MLOC_56161 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2306730.2642630.3364970.273321
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0.193674000.173364
INF2Developing inflorescences (1-1.5 cm)000.0590340.0497962
ROORoots from the seedlings (10 cm shoot stage)0.43708300.1660740.128407
NODDeveloping tillers at six leaf stage, 3rd internode0.1987750.1272560.01598210.235311
CAR5Developing grain, bracts removed (5 DPA)27.82834.367728.41330.3614
CAR15Developing grain, bracts removed (15 DPA)0.7103891.014031.01262.34008



CDS Structure of MLOC_56161






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56161.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56161.1CUST_13484_PI427708080AvailableAvailablecontig_40594 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g38610.1 +2 2e-22 94 54/90 (60%) 13109.m03849 protein ZOS9-18 - C2H2 zinc finger protein, expressed
TAIR PP10 AT5G57520.1 +2 6e-15 71 30/36 (83%) | Symbols: ZFP2, ATZFP2 | zinc finger protein 2 | chr5:23296019-23296471 FORWARD LENGTH=150