MLOC_5616 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 1.79328 | 1.52986 | 1.43164 | 1.64328 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 2.25218 | 1.97587 | 4.91483 | 2.62952 |
| INF1 | Young developing inflorescences (5mm) | 2.70377 | 2.99592 | 4.10824 | 3.11955 |
| INF2 | Developing inflorescences (1-1.5 cm) | 2.37722 | 3.51272 | 2.37031 | 3.5254 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 1.27901 | 1.59682 | 1.87483 | 1.93424 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0.36152 | 0.678841 | 1.90189 | 2.80427 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 1.28414 | 1.79686 | 1.39104 | 1.683 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.316869 | 0.149183 | 0.215894 | 0.597262 |
CDS Structure of MLOC_5616
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_5616.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os03g07340.1 |
+2 |
5e-71 |
227 |
111/138 (80%) |
13103.m00817 protein ribosomal L18p/L5e family protein, putative, expressed |
| TAIR PP10 |
AT1G14205.1 |
+2 |
2e-50 |
171 |
82/121 (68%) |
Ribosomal L18p/L5e family protein | chr1:4855582-4856762 FORWARD LENGTH=165 |
