MLOC_56157 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.325825.031435.28934.3379
LEAShoots from the seedlings (10 cm shoot stage)8.022245.840056.53025.47156
INF1Young developing inflorescences (5mm)7.185787.072896.177315.64948
INF2Developing inflorescences (1-1.5 cm)8.840689.5024810.304510.0428
ROORoots from the seedlings (10 cm shoot stage)6.390947.872966.695078.16406
NODDeveloping tillers at six leaf stage, 3rd internode5.932948.417736.9218424.049
CAR5Developing grain, bracts removed (5 DPA)7.417326.588397.270626.59468
CAR15Developing grain, bracts removed (15 DPA)2.325292.96192.168775.74446



CDS Structure of MLOC_56157






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56157.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376718NoneNoneNoneNone
MLOC_56157.2CUST_3565_PI427708080AvailableAvailablecontig_40593 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g08850.1 -2 0.0 1080 540/692 (78%) 13106.m00938 protein cyclic nucleotide-gated ion channel 14, putative, expressed
TAIR PP10 AT4G30360.1 -2 0.0 777 390/661 (59%) | Symbols: ATCNGC17, CNGC17 | cyclic nucleotide-gated channel 17 | chr4:14855060-14857779 REVERSE LENGTH=720