MLOC_56149 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.089919.951417.199118.1604
LEAShoots from the seedlings (10 cm shoot stage)12.152313.237614.055211.3363
INF1Young developing inflorescences (5mm)37.601937.23634.869930.474
INF2Developing inflorescences (1-1.5 cm)28.373925.340323.39928.0189
ROORoots from the seedlings (10 cm shoot stage)7.8419720.168413.255321.4901
NODDeveloping tillers at six leaf stage, 3rd internode3.912714.12687.4959416.1244
CAR5Developing grain, bracts removed (5 DPA)10.163510.706210.18019.97398
CAR15Developing grain, bracts removed (15 DPA)4.356323.284843.280228.56283



CDS Structure of MLOC_56149






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56149.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56149.1CUST_13482_PI427708080AvailableAvailablecontig_40585 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g43130.1 +3 0.0 811 418/514 (81%) 13101.m04447 protein DEAD/DEAH box helicase, putative, expressed
TAIR PP10 AT5G08610.1 +3 0.0 664 338/494 (68%) P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:2790341-2794059 FORWARD LENGTH=850