MLOC_56140 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3539970.06976410.1482220.182349
LEAShoots from the seedlings (10 cm shoot stage)0.1731670.5225120.5682590.397028
INF1Young developing inflorescences (5mm)0.3555660.3978390.5025440.378218
INF2Developing inflorescences (1-1.5 cm)1.525581.691661.670481.90495
ROORoots from the seedlings (10 cm shoot stage)0.2083820.34831300.609801
NODDeveloping tillers at six leaf stage, 3rd internode0.4635450.28830.2859061.00451
CAR5Developing grain, bracts removed (5 DPA)0.2772880.3234640.3972180.35238
CAR15Developing grain, bracts removed (15 DPA)1.790392.132120.8876734.34355



CDS Structure of MLOC_56140






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56140.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56140.1CUST_7783_PI427708083AvailableAvailablecontig_40582 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g22670.1 +3 3e-94 271 173/321 (54%) 13105.m02295 protein transcription factor IIA large subunit, putative, expressed
TAIR PP10 AT1G07470.1 +3 4e-36 138 89/205 (43%) Transcription factor IIA, alpha/beta subunit | chr1:2291723-2294350 FORWARD LENGTH=375