- Predicted Gene MLOC_56140
MLOC_56140 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 0.353997 | 0.0697641 | 0.148222 | 0.182349 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 0.173167 | 0.522512 | 0.568259 | 0.397028 |
| INF1 | Young developing inflorescences (5mm) | 0.355566 | 0.397839 | 0.502544 | 0.378218 |
| INF2 | Developing inflorescences (1-1.5 cm) | 1.52558 | 1.69166 | 1.67048 | 1.90495 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 0.208382 | 0.348313 | 0 | 0.609801 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0.463545 | 0.2883 | 0.285906 | 1.00451 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 0.277288 | 0.323464 | 0.397218 | 0.35238 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 1.79039 | 2.13212 | 0.887673 | 4.34355 |
CDS Structure of MLOC_56140
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_56140.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g22670.1 |
+3 |
3e-94 |
271 |
173/321 (54%) |
13105.m02295 protein transcription factor IIA large subunit, putative, expressed |
| TAIR PP10 |
AT1G07470.1 |
+3 |
4e-36 |
138 |
89/205 (43%) |
Transcription factor IIA, alpha/beta subunit | chr1:2291723-2294350 FORWARD LENGTH=375 |