MLOC_56136 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0.0693734000.0665515
INF1Young developing inflorescences (5mm)0.07078680.1172720.09259380.0927301
INF2Developing inflorescences (1-1.5 cm)00.03278610.04397080.0938213
ROORoots from the seedlings (10 cm shoot stage)00.0450440.1228540.124108
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.4696980.7630450.4565640.674495
CAR15Developing grain, bracts removed (15 DPA)00.080872100.279928



CDS Structure of MLOC_56136






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56136.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56136.1CUST_13481_PI427708080AvailableAvailablecontig_40582 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g02190.1 +1 5e-72 225 114/160 (71%) 13105.m00175 protein expressed protein
TAIR PP10 AT5G06240.1 +1 1e-49 166 85/148 (57%) | Symbols: emb2735 | embryo defective 2735 | chr5:1888380-1889512 FORWARD LENGTH=162