MLOC_5613 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3587710.2399930.3634690.314628
LEAShoots from the seedlings (10 cm shoot stage)0.4330932.251912.603381.54594
INF1Young developing inflorescences (5mm)00.1625450.3020750.21169
INF2Developing inflorescences (1-1.5 cm)0.06647020.061698700.0908413
ROORoots from the seedlings (10 cm shoot stage)2.856674.282892.453654.92321
NODDeveloping tillers at six leaf stage, 3rd internode2.053990.6782721.997253.15708
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0.1718480.180830.254220.42787



CDS Structure of MLOC_5613






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5613.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5613.1CUST_13480_PI427708080AvailableAvailablecontig_136454 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g38780.1 -1 4e-44 150 107/191 (56%) 13111.m03812 protein EF hand family protein, putative
TAIR PP10 AT5G39670.1 -1 8e-22 91 47/112 (42%) Calcium-binding EF-hand family protein | chr5:15883270-15883884 FORWARD LENGTH=204