MLOC_56129 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.725810.946712.721811.887
LEAShoots from the seedlings (10 cm shoot stage)10.70811.850764.866525.22668
INF1Young developing inflorescences (5mm)25.565826.415728.362122.2242
INF2Developing inflorescences (1-1.5 cm)26.355429.832629.68230.1886
ROORoots from the seedlings (10 cm shoot stage)5.967739.992218.8660311.0935
NODDeveloping tillers at six leaf stage, 3rd internode10.967915.757911.396149.27
CAR5Developing grain, bracts removed (5 DPA)12.815113.049513.274412.0852
CAR15Developing grain, bracts removed (15 DPA)3.908423.302914.203928.22599



CDS Structure of MLOC_56129






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56129.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373502NoneNoneNoneNone
MLOC_56129.2CUST_3562_PI427708080AvailableAvailablecontig_40574 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g07790.1 -1 2e-137 399 221/250 (88%) 13103.m00875 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT3G63530.2 -1 1e-61 203 122/248 (49%) | Symbols: BB, BB2 | RING/U-box superfamily protein | chr3:23456407-23457787 REVERSE LENGTH=248