MLOC_56128 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains24.026414.699915.742516.7276
LEAShoots from the seedlings (10 cm shoot stage)26.374742.99255.905833.4485
INF1Young developing inflorescences (5mm)6.422819.098799.536136.89691
INF2Developing inflorescences (1-1.5 cm)9.887179.911910.049810.3108
ROORoots from the seedlings (10 cm shoot stage)64.66241.143931.756748.387
NODDeveloping tillers at six leaf stage, 3rd internode27.965257.229561.9258168.581
CAR5Developing grain, bracts removed (5 DPA)239.602249.201232.518222.854
CAR15Developing grain, bracts removed (15 DPA)22.189925.649726.108754.959



CDS Structure of MLOC_56128






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56128.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248637.1NoneNoneNoneNone
MLOC_56128.1CUST_3561_PI427708080AvailableAvailablecontig_40574 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g18454.2 -3 4e-105 316 153/224 (68%) 13103.m02212 protein gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed
TAIR PP10 AT1G07080.1 -3 7e-69 222 99/183 (54%) Thioredoxin superfamily protein | chr1:2170069-2171861 FORWARD LENGTH=265