MLOC_56126 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.168541.682561.770761.59811
LEAShoots from the seedlings (10 cm shoot stage)5.545229.33276.26626.15184
INF1Young developing inflorescences (5mm)2.934722.532113.118092.43051
INF2Developing inflorescences (1-1.5 cm)2.470942.281492.806272.7441
ROORoots from the seedlings (10 cm shoot stage)1.397542.160792.473792.63217
NODDeveloping tillers at six leaf stage, 3rd internode1.80542.012274.249788.59113
CAR5Developing grain, bracts removed (5 DPA)3.179253.390263.616493.37871
CAR15Developing grain, bracts removed (15 DPA)1.172911.764171.045413.12681



CDS Structure of MLOC_56126






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56126.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56126.4CUST_13479_PI427708080AvailableAvailablecontig_40572 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g37760.2 +2 0.0 601 289/373 (77%) 13107.m03889 protein lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
TAIR PP10 AT1G11170.1 +2 4e-132 397 200/376 (53%) Protein of unknown function (DUF707) | chr1:3741724-3744459 FORWARD LENGTH=438