MLOC_56125 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.036413.674154.03393.90378
LEAShoots from the seedlings (10 cm shoot stage)6.824335.890356.296885.87357
INF1Young developing inflorescences (5mm)4.171614.546555.23474.18659
INF2Developing inflorescences (1-1.5 cm)12.01077.577358.4256410.8401
ROORoots from the seedlings (10 cm shoot stage)4.293515.439215.220877.15354
NODDeveloping tillers at six leaf stage, 3rd internode6.051767.189839.889128.2847
CAR5Developing grain, bracts removed (5 DPA)8.247628.050568.094428.70389
CAR15Developing grain, bracts removed (15 DPA)10.39079.740618.8107424.3278



CDS Structure of MLOC_56125






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56125.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375924NoneNoneNoneNone
MLOC_56125.1CUST_3560_PI427708080AvailableAvailablecontig_40572 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g37800.1 +1 2e-141 431 268/475 (56%) 13107.m03896 protein bromodomain domain containing protein, expressed
TAIR PP10 AT1G61215.1 +1 1e-40 157 143/485 (29%) | Symbols: BRD4 | bromodomain 4 | chr1:22573173-22575374 FORWARD LENGTH=475