MLOC_56124 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.430693.703884.460664.41141
LEAShoots from the seedlings (10 cm shoot stage)10.51574.732594.809755.77796
INF1Young developing inflorescences (5mm)4.22033.483713.652383.53085
INF2Developing inflorescences (1-1.5 cm)6.655987.259868.41258.9521
ROORoots from the seedlings (10 cm shoot stage)15.562311.50867.9006214.9173
NODDeveloping tillers at six leaf stage, 3rd internode6.2086711.02316.66633.6859
CAR5Developing grain, bracts removed (5 DPA)12.512911.012411.433912.7533
CAR15Developing grain, bracts removed (15 DPA)1.314271.060241.575413.34326



CDS Structure of MLOC_56124






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56124.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365714NoneNoneNoneNone
MLOC_56124.2CUST_18130_PI427708080AvailableAvailablecontig_40550 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g60270.2 -3 1e-114 353 192/248 (77%) 13101.m06415 protein homeobox domain containing protein, expressed
TAIR PP10 AT4G35550.1 -3 3e-55 192 109/153 (71%) | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related homeobox 13 | chr4:16875814-16877167 REVERSE LENGTH=268