MLOC_56112 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.9426890.7309310.4045180.701876
LEAShoots from the seedlings (10 cm shoot stage)0.2388670.135960.2573120.174025
INF1Young developing inflorescences (5mm)0.4746880.4040390.07520030.295073
INF2Developing inflorescences (1-1.5 cm)0.1796230.2261520.2182530.232887
ROORoots from the seedlings (10 cm shoot stage)0.4650680.652890.4046820.708482
NODDeveloping tillers at six leaf stage, 3rd internode0.102560.1975530.2150720.557872
CAR5Developing grain, bracts removed (5 DPA)0.4387390.6093840.4420840.496398
CAR15Developing grain, bracts removed (15 DPA)0.4071610.3888980.2522850.894729



CDS Structure of MLOC_56112






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56112.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56112.1CUST_13478_PI427708080AvailableAvailablecontig_40560 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g38784.1 -1 2e-37 140 58/85 (68%) 13109.m03875 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT1G79480.2 -1 2e-37 137 56/85 (66%) Carbohydrate-binding X8 domain superfamily protein | chr1:29897905-29899267 REVERSE LENGTH=396