MLOC_56110 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.443052.212551.536741.7386
LEAShoots from the seedlings (10 cm shoot stage)4.422153.403033.898133.22303
INF1Young developing inflorescences (5mm)2.84892.654793.984832.36168
INF2Developing inflorescences (1-1.5 cm)3.579333.429064.169863.67239
ROORoots from the seedlings (10 cm shoot stage)1.052091.125111.355261.29388
NODDeveloping tillers at six leaf stage, 3rd internode2.105242.812142.613928.85855
CAR5Developing grain, bracts removed (5 DPA)2.225132.45932.377332.10602
CAR15Developing grain, bracts removed (15 DPA)0.8062410.6900870.8296341.60694



CDS Structure of MLOC_56110






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56110.20
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362172NoneNoneNoneNone
MLOC_56110.20CUST_3555_PI427708080AvailableAvailablecontig_40560 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g52230.1 +1 0.0 993 518/748 (69%) 13104.m05349 protein ent-kaurene synthase, chloroplast precursor, putative, expressed
TAIR PP10 AT1G79460.1 +1 0.0 655 365/748 (49%) | Symbols: GA2, KS, ATKS, ATKS1, KS1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr1:29890568-29894436 FORWARD LENGTH=785