MLOC_56096 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.275536.106929.916730.5701
LEAShoots from the seedlings (10 cm shoot stage)17.84285.951784.716798.0654
INF1Young developing inflorescences (5mm)68.667179.407364.856561.7307
INF2Developing inflorescences (1-1.5 cm)72.241376.851362.352379.3396
ROORoots from the seedlings (10 cm shoot stage)24.218532.940321.631335.0916
NODDeveloping tillers at six leaf stage, 3rd internode28.907936.24316.7451492.832
CAR5Developing grain, bracts removed (5 DPA)14.643912.292711.812612.5449
CAR15Developing grain, bracts removed (15 DPA)1.422640.7869581.305192.75336



CDS Structure of MLOC_56096






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56096.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365637NoneNoneNoneNone
MLOC_56096.1CUST_18129_PI427708080AvailableAvailablecontig_40550 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g38570.1 +3 0.0 1910 1046/1228 (85%) 13104.m03704 protein multidrug resistance protein, putative, expressed
TAIR PP10 AT3G28860.1 +3 0.0 1813 985/1228 (80%) | Symbols: ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ATP binding cassette subfamily B19 | chr3:10870287-10877286 REVERSE LENGTH=1252