MLOC_56094 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.859584.677254.506494.82707
LEAShoots from the seedlings (10 cm shoot stage)48.736392.734389.087861.0586
INF1Young developing inflorescences (5mm)7.20596.15138.14575.85785
INF2Developing inflorescences (1-1.5 cm)6.692927.478367.417917.68211
ROORoots from the seedlings (10 cm shoot stage)5.590594.0343.291354.7829
NODDeveloping tillers at six leaf stage, 3rd internode11.882311.063620.1737.9462
CAR5Developing grain, bracts removed (5 DPA)16.451316.740617.333315.9071
CAR15Developing grain, bracts removed (15 DPA)7.167476.594487.2039815.7667



CDS Structure of MLOC_56094






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56094.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251780.1NoneNoneNoneNone
MLOC_56094.1CUST_3553_PI427708080AvailableAvailablecontig_40549 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g33060.1 +3 2e-159 464 235/261 (90%) 13104.m03186 protein NAD dependent epimerase/dehydratase family protein, putative, expressed
TAIR PP10 AT1G32220.1 +3 5e-130 388 180/253 (71%) NAD(P)-binding Rossmann-fold superfamily protein | chr1:11608038-11609591 FORWARD LENGTH=296