MLOC_56093 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.397518.251116.345214.4955
LEAShoots from the seedlings (10 cm shoot stage)22.101212.870110.500812.7683
INF1Young developing inflorescences (5mm)25.867424.663127.315719.5185
INF2Developing inflorescences (1-1.5 cm)25.636824.252223.843225.1089
ROORoots from the seedlings (10 cm shoot stage)7.2832614.803310.111414.9637
NODDeveloping tillers at six leaf stage, 3rd internode32.239229.8732.072797.7088
CAR5Developing grain, bracts removed (5 DPA)16.454915.444416.384914.3696
CAR15Developing grain, bracts removed (15 DPA)29.529325.33424.312555.5383



CDS Structure of MLOC_56093






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56093.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356854NoneNoneNoneNone
MLOC_56093.2CUST_3552_PI427708080AvailableAvailablecontig_40547 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g11960.1 -1 0.0 1124 583/829 (70%) 13111.m01266 protein disease resistance protein RPM1, putative, expressed
TAIR PP10 AT3G07040.1 -1 2e-112 376 264/883 (30%) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926