- Predicted Gene MLOC_56085
MLOC_56085 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 110.111 | 80.6947 | 83.3598 | 87.3957 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 43.5711 | 53.158 | 45.8841 | 39.0803 |
| INF1 | Young developing inflorescences (5mm) | 51.2201 | 58.3308 | 59.2772 | 48.9691 |
| INF2 | Developing inflorescences (1-1.5 cm) | 37.7344 | 37.4689 | 42.077 | 42.9448 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 139.429 | 71.4643 | 89.8471 | 96.1731 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 80.3334 | 73.4076 | 82.9431 | 221.499 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 30.449 | 38.0104 | 33.5274 | 33.763 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 7.67006 | 7.00303 | 8.46191 | 18.153 |
CDS Structure of MLOC_56085
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_56085.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os09g32810.1 |
+3 |
1e-140 |
402 |
201/229 (88%) |
13109.m03280 protein ribulose-phosphate 3-epimerase, putative, expressed |
| TAIR PP10 |
AT3G01850.2 |
+3 |
4e-125 |
361 |
176/227 (78%) |
Aldolase-type TIM barrel family protein | chr3:300428-301987 REVERSE LENGTH=225 |
