MLOC_56084 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains123.42582.296989.797699.8791
LEAShoots from the seedlings (10 cm shoot stage)57.039552.923574.477253.5903
INF1Young developing inflorescences (5mm)82.993289.171785.996276.7904
INF2Developing inflorescences (1-1.5 cm)59.652673.414374.122679.7954
ROORoots from the seedlings (10 cm shoot stage)139.52198.592498.2169133.705
NODDeveloping tillers at six leaf stage, 3rd internode62.551169.259647.9635214.935
CAR5Developing grain, bracts removed (5 DPA)91.509593.547286.568595.2112
CAR15Developing grain, bracts removed (15 DPA)19.699318.966918.798447.7945



CDS Structure of MLOC_56084






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56084.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252145.1NoneNoneNoneNone
MLOC_56084.1CUST_3549_PI427708080AvailableAvailablecontig_40536 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g32800.1 +3 3e-150 428 208/221 (94%) 13109.m03279 protein peptidase, T1 family, putative, expressed
TAIR PP10 AT3G60820.3 +3 2e-117 344 163/213 (77%) | Symbols: PBF1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr3:22472038-22473809 REVERSE LENGTH=223