MLOC_5606 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.5297513.546212.347510.5624
LEAShoots from the seedlings (10 cm shoot stage)8.354794.85123.681324.76297
INF1Young developing inflorescences (5mm)43.292644.278142.22532.3552
INF2Developing inflorescences (1-1.5 cm)33.643139.413432.464335.9238
ROORoots from the seedlings (10 cm shoot stage)4.4240710.91868.998111.0196
NODDeveloping tillers at six leaf stage, 3rd internode0.7961861.164332.988255.02365
CAR5Developing grain, bracts removed (5 DPA)19.272917.653419.666416.5021
CAR15Developing grain, bracts removed (15 DPA)5.542085.137394.3696610.3102



CDS Structure of MLOC_5606






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5606.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5606.2CUST_13466_PI427708080AvailableAvailablecontig_136445 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g04970.1 +3 0.0 1284 628/759 (83%) 13102.m00530 protein expressed protein
TAIR PP10 AT1G33410.2 +3 0.0 622 348/778 (45%) | Symbols: SAR1 | SUPPRESSOR OF AUXIN RESISTANCE1 | chr1:12109769-12118828 REVERSE LENGTH=1504