MLOC_56058 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.0515628000.0236267
NODDeveloping tillers at six leaf stage, 3rd internode000.007045710.0188266
CAR5Developing grain, bracts removed (5 DPA)2.855013.787062.876993.7991
CAR15Developing grain, bracts removed (15 DPA)7.18075.563786.9738118.1983



CDS Structure of MLOC_56058






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56058.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372765NoneNoneNoneNone
MLOC_56058.1CUST_297_PI427708083AvailableAvailablecontig_40506 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g63680.1 -1 3e-43 162 148/350 (42%) 13101.m06832 protein MYB family transcription factor, putative, expressed
TAIR PP10 AT4G18770.1 -1 2e-32 129 64/134 (48%) | Symbols: MYB98, AtMYB98 | myb domain protein 98 | chr4:10311068-10312557 FORWARD LENGTH=427