MLOC_56053 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.7810711.04549.079199.42249
LEAShoots from the seedlings (10 cm shoot stage)42.060148.484335.845537.2911
INF1Young developing inflorescences (5mm)13.158311.999512.497110.5709
INF2Developing inflorescences (1-1.5 cm)12.186413.895812.794814.2776
ROORoots from the seedlings (10 cm shoot stage)1.221322.991433.124053.52246
NODDeveloping tillers at six leaf stage, 3rd internode12.060111.188513.441341.5075
CAR5Developing grain, bracts removed (5 DPA)15.106214.32915.379114.5117
CAR15Developing grain, bracts removed (15 DPA)7.738637.45997.3302917.062



CDS Structure of MLOC_56053






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56053.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363533NoneNoneNoneNone
MLOC_56053.1CUST_3542_PI427708080AvailableAvailablecontig_40500 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g13660.1 -1 0.0 1432 813/918 (89%) 13106.m01508 protein alanyl-tRNA synthetase, putative, expressed
TAIR PP10 AT5G22800.1 -1 0.0 1147 647/938 (69%) | Symbols: EMB86, EMB1030, EMB263 | Alanyl-tRNA synthetase, class IIc | chr5:7616221-7619961 REVERSE LENGTH=978