MLOC_56052 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.09715811.505071.676631.11108
LEAShoots from the seedlings (10 cm shoot stage)199.553130.44200.99140.933
INF1Young developing inflorescences (5mm)0.3108010.03892670.2629480.16765
INF2Developing inflorescences (1-1.5 cm)0.3826440.6411930.9875570.704307
ROORoots from the seedlings (10 cm shoot stage)0.8623531.899539.140542.74759
NODDeveloping tillers at six leaf stage, 3rd internode28.08758.073635.6305822.5962
CAR5Developing grain, bracts removed (5 DPA)9.362827.838896.932257.87986
CAR15Developing grain, bracts removed (15 DPA)0.3681910.4126320.1459210.809621



CDS Structure of MLOC_56052






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56052.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359563NoneNoneNoneNone
MLOC_56052.1CUST_3541_PI427708080AvailableAvailablecontig_40500 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g41710.1 -2 2e-174 494 241/266 (91%) 13101.m04278 protein chlorophyll A-B binding protein, putative, expressed
TAIR PP10 AT2G34420.1 -2 4e-164 467 232/267 (87%) | Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265