- Predicted Gene MLOC_56052
MLOC_56052 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_56052_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_56052_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.0971581 | 1.50507 | 1.67663 | 1.11108 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 199.553 | 130.44 | 200.99 | 140.933 |
INF1 | Young developing inflorescences (5mm) | 0.310801 | 0.0389267 | 0.262948 | 0.16765 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.382644 | 0.641193 | 0.987557 | 0.704307 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.862353 | 1.89953 | 9.14054 | 2.74759 |
NOD | Developing tillers at six leaf stage, 3rd internode | 28.0875 | 8.07363 | 5.63058 | 22.5962 |
CAR5 | Developing grain, bracts removed (5 DPA) | 9.36282 | 7.83889 | 6.93225 | 7.87986 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.368191 | 0.412632 | 0.145921 | 0.809621 |
CDS Structure of MLOC_56052
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_56052.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g41710.1 |
-2 |
2e-174 |
494 |
241/266 (91%) |
13101.m04278 protein chlorophyll A-B binding protein, putative, expressed |
TAIR PP10 |
AT2G34420.1 |
-2 |
4e-164 |
467 |
232/267 (87%) |
| Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265 |