MLOC_56051 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6932062.869642.3162.08916
LEAShoots from the seedlings (10 cm shoot stage)228.55179.054234.855172.508
INF1Young developing inflorescences (5mm)1.456640.7415490.7920350.850085
INF2Developing inflorescences (1-1.5 cm)4.171694.242246.52015.16104
ROORoots from the seedlings (10 cm shoot stage)1.021724.5601712.35195.31358
NODDeveloping tillers at six leaf stage, 3rd internode40.69519.14715.405454.2003
CAR5Developing grain, bracts removed (5 DPA)2.779872.399781.173632.08609
CAR15Developing grain, bracts removed (15 DPA)0.1981880.3031840.2309230.589406



CDS Structure of MLOC_56051






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56051.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252918.1NoneNoneNoneNone
MLOC_56051.1CUST_3540_PI427708080AvailableAvailablecontig_40500 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g52240.1 -2 2e-169 479 232/253 (92%) 13101.m05463 protein chlorophyll A-B binding protein, putative, expressed
TAIR PP10 AT2G34420.1 -2 3e-157 448 223/253 (88%) | Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265