MLOC_56031 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains433.231349.482343.39410.369
LEAShoots from the seedlings (10 cm shoot stage)228.634123.936147.298154.013
INF1Young developing inflorescences (5mm)601.156568.004572.326528.857
INF2Developing inflorescences (1-1.5 cm)424.522398.326402.859477.621
ROORoots from the seedlings (10 cm shoot stage)284.639342.459327.452459.284
NODDeveloping tillers at six leaf stage, 3rd internode47.155853.9697116.291231.199
CAR5Developing grain, bracts removed (5 DPA)316.229314.221319.03338.908
CAR15Developing grain, bracts removed (15 DPA)117.914119.201109.135283.17



CDS Structure of MLOC_56031






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56031.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251075.1NoneNoneNoneNone
MLOC_56031.1CUST_3538_PI427708080AvailableAvailablecontig_40488 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g07010.1 +2 0.0 736 365/388 (94%) 13112.m00726 protein ribosomal protein L3, putative, expressed
TAIR PP10 AT1G43170.8 +2 0.0 680 331/387 (86%) | Symbols: RP1 | ribosomal protein 1 | chr1:16266992-16268631 FORWARD LENGTH=389