MLOC_56007 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.301810.54199.8044611.6968
LEAShoots from the seedlings (10 cm shoot stage)21.592541.932640.463128.5378
INF1Young developing inflorescences (5mm)0.06263140.03805210.0588920.0501678
INF2Developing inflorescences (1-1.5 cm)0.017349800.1005680.0610104
ROORoots from the seedlings (10 cm shoot stage)53.469967.962463.611176.285
NODDeveloping tillers at six leaf stage, 3rd internode2.29493.221446.6405311.0878
CAR5Developing grain, bracts removed (5 DPA)0.9504490.9377280.8511561.02143
CAR15Developing grain, bracts removed (15 DPA)0.6627330.8437640.6382422.03738



CDS Structure of MLOC_56007






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56007.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361527NoneNoneNoneNone
MLOC_56007.1CUST_3535_PI427708080AvailableAvailablecontig_40473 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g40818.1 +1 0.0 602 311/464 (67%) 13106.m04254 protein aspartic proteinase, putative, expressed
TAIR PP10 AT5G10770.1 +1 1e-119 369 194/463 (42%) Eukaryotic aspartyl protease family protein | chr5:3403331-3405331 REVERSE LENGTH=474