MLOC_55987 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.01008010.05109880.0153240.0359348
LEAShoots from the seedlings (10 cm shoot stage)0.03691560.037917800.0335791
INF1Young developing inflorescences (5mm)1.403161.520261.497461.31415
INF2Developing inflorescences (1-1.5 cm)2.181261.648521.615412.05042
ROORoots from the seedlings (10 cm shoot stage)0.03930320.1077970.06742710.131941
NODDeveloping tillers at six leaf stage, 3rd internode0.06700320.1527020.1031880.525032
CAR5Developing grain, bracts removed (5 DPA)7.79617.260937.390947.51972
CAR15Developing grain, bracts removed (15 DPA)3.351553.397983.167077.97822



CDS Structure of MLOC_55987






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55987.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55987.4CUST_13457_PI427708080AvailableAvailablecontig_40454 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g02860.1 +1 7e-99 343 202/388 (52%) 13101.m00225 protein expressed protein
TAIR PP10 AT1G72390.1 +1 4e-21 100 140/575 (24%) CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). | chr1:27245455-27251218 FORWARD LENGTH=1325