- Predicted Gene MLOC_55987
MLOC_55987 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_55987_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_55987_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 0.0100801 | 0.0510988 | 0.015324 | 0.0359348 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.0369156 | 0.0379178 | 0 | 0.0335791 |
INF1 | Young developing inflorescences (5mm) | 1.40316 | 1.52026 | 1.49746 | 1.31415 |
INF2 | Developing inflorescences (1-1.5 cm) | 2.18126 | 1.64852 | 1.61541 | 2.05042 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.0393032 | 0.107797 | 0.0674271 | 0.131941 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.0670032 | 0.152702 | 0.103188 | 0.525032 |
CAR5 | Developing grain, bracts removed (5 DPA) | 7.7961 | 7.26093 | 7.39094 | 7.51972 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.35155 | 3.39798 | 3.16707 | 7.97822 |
CDS Structure of MLOC_55987
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55987.4
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g02860.1 |
+1 |
7e-99 |
343 |
202/388 (52%) |
13101.m00225 protein expressed protein |
TAIR PP10 |
AT1G72390.1 |
+1 |
4e-21 |
100 |
140/575 (24%) |
CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). | chr1:27245455-27251218 FORWARD LENGTH=1325 |