MLOC_55982 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.10522.460321.481119.4065
LEAShoots from the seedlings (10 cm shoot stage)27.824327.648223.930923.3678
INF1Young developing inflorescences (5mm)31.169929.021226.144124.4918
INF2Developing inflorescences (1-1.5 cm)36.11833.538832.736438.2261
ROORoots from the seedlings (10 cm shoot stage)15.656528.329321.74432.5241
NODDeveloping tillers at six leaf stage, 3rd internode25.398828.618624.0915100.214
CAR5Developing grain, bracts removed (5 DPA)42.112934.227538.408137.5687
CAR15Developing grain, bracts removed (15 DPA)19.056318.269718.112242.3264



CDS Structure of MLOC_55982






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55982.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357096NoneNoneNoneNone
MLOC_55982.1CUST_3531_PI427708080AvailableAvailablecontig_40447 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g50840.2 -2 0.0 1910 1124/1680 (67%) 13102.m05772 protein BAH domain containing protein, putative, expressed
TAIR PP10 AT3G48050.2 -2 6e-175 580 395/811 (49%) BAH domain ;TFIIS helical bundle-like domain | chr3:17734270-17739412 REVERSE LENGTH=1613