MLOC_55976 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.312020.7789570.7784610.81308
LEAShoots from the seedlings (10 cm shoot stage)7.267582.363583.94593.37273
INF1Young developing inflorescences (5mm)0.223380.2596920.5474750.224106
INF2Developing inflorescences (1-1.5 cm)0.792820.6533630.8629330.693928
ROORoots from the seedlings (10 cm shoot stage)45.067310.950110.548218.3515
NODDeveloping tillers at six leaf stage, 3rd internode1.345491.508140.5995733.58505
CAR5Developing grain, bracts removed (5 DPA)3.801983.828482.896042.77861
CAR15Developing grain, bracts removed (15 DPA)27.349223.634222.173547.9129



CDS Structure of MLOC_55976






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55976.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355712NoneNoneNoneNone
MLOC_55976.1CUST_3530_PI427708080AvailableAvailablecontig_40444 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g53320.1 -1 9e-92 296 145/165 (88%) 13102.m06088 protein universal stress protein domain containing protein, putative, expressed
TAIR PP10 AT3G03270.2 -1 8e-58 199 94/153 (61%) Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:762136-763075 REVERSE LENGTH=159