MLOC_55975 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains23.367622.93427.709622.0043
LEAShoots from the seedlings (10 cm shoot stage)36.32538.798832.916128.3346
INF1Young developing inflorescences (5mm)16.205915.178115.447911.9416
INF2Developing inflorescences (1-1.5 cm)10.923311.739213.238711.7797
ROORoots from the seedlings (10 cm shoot stage)30.306524.598528.493728.5937
NODDeveloping tillers at six leaf stage, 3rd internode28.165918.28921.672858.7288
CAR5Developing grain, bracts removed (5 DPA)26.037827.964129.323224.484
CAR15Developing grain, bracts removed (15 DPA)10.27448.272029.2396419.6248



CDS Structure of MLOC_55975






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55975.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363580NoneNoneNoneNone
MLOC_55975.1CUST_3529_PI427708080AvailableAvailablecontig_40444 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g53330.2 +2 0.0 629 333/370 (90%) 13102.m06092 protein 1-aminocyclopropane-1-carboxylate deaminase, putative, expressed
TAIR PP10 AT1G48420.1 +2 8e-177 531 268/371 (72%) | Symbols: D-CDES, ATACD1, ACD1 | D-cysteine desulfhydrase | chr1:17896767-17898803 REVERSE LENGTH=401