MLOC_55971 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.49175.049366.629317.76445
LEAShoots from the seedlings (10 cm shoot stage)8.298075.302283.170985.46452
INF1Young developing inflorescences (5mm)14.29089.9654310.436611.8635
INF2Developing inflorescences (1-1.5 cm)5.797518.118177.7162510.1418
ROORoots from the seedlings (10 cm shoot stage)7.548747.658784.182212.5857
NODDeveloping tillers at six leaf stage, 3rd internode57.25210.058341.274656.7242
CAR5Developing grain, bracts removed (5 DPA)4.742623.411094.912835.38691
CAR15Developing grain, bracts removed (15 DPA)0.4846780.4841060.4734541.44039



CDS Structure of MLOC_55971






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55971.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249474.1NoneNoneNoneNone
MLOC_55971.2CUST_18126_PI427708080AvailableAvailablecontig_40436 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g18150.1 -2 4e-157 452 230/274 (84%) 13103.m02174 protein protein phosphatase 2C, putative, expressed
TAIR PP10 AT2G30020.1 -2 4e-98 301 158/269 (59%) Protein phosphatase 2C family protein | chr2:12814437-12815904 FORWARD LENGTH=396