MLOC_55970 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.359725.086127.342525.0657
LEAShoots from the seedlings (10 cm shoot stage)40.005626.389226.050126.2553
INF1Young developing inflorescences (5mm)36.760254.466947.032236.9748
INF2Developing inflorescences (1-1.5 cm)39.680542.397346.707742.3613
ROORoots from the seedlings (10 cm shoot stage)61.135541.722838.139552.4871
NODDeveloping tillers at six leaf stage, 3rd internode33.269553.791324.4332158.726
CAR5Developing grain, bracts removed (5 DPA)29.992231.010426.210726.0187
CAR15Developing grain, bracts removed (15 DPA)11.84859.9242712.978424.4479



CDS Structure of MLOC_55970






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55970.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252184.1NoneNoneNoneNone
MLOC_55970.1CUST_3527_PI427708080AvailableAvailablecontig_40440 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g03780.1 +3 1e-98 311 151/174 (87%) 13105.m00370 protein cation efflux family protein, putative, expressed
TAIR PP10 AT2G46800.2 +3 1e-73 244 126/173 (73%) | Symbols: ZAT, ATMTP1, MTP1, ZAT1, ATCDF1 | zinc transporter of Arabidopsis thaliana | chr2:19238128-19239324 FORWARD LENGTH=398