MLOC_55960 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.29224.675221.884619.4097
LEAShoots from the seedlings (10 cm shoot stage)21.27035.878818.1410410.0495
INF1Young developing inflorescences (5mm)27.374631.635529.146322.129
INF2Developing inflorescences (1-1.5 cm)24.913928.199723.889925.8874
ROORoots from the seedlings (10 cm shoot stage)7.6204713.745610.13313.1215
NODDeveloping tillers at six leaf stage, 3rd internode34.734341.416226.6827114.331
CAR5Developing grain, bracts removed (5 DPA)17.496117.702118.309915.4044
CAR15Developing grain, bracts removed (15 DPA)3.856253.549073.577747.71914



CDS Structure of MLOC_55960






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55960.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55960.2CUST_13454_PI427708080AvailableAvailablecontig_40428 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g40430.1 +3 0.0 1367 749/949 (79%) 13102.m04505 protein HEAT repeat family protein, putative, expressed
TAIR PP10 AT2G20190.1 +3 0.0 939 530/952 (56%) | Symbols: ATCLASP, CLASP | CLIP-associated protein | chr2:8711862-8718813 REVERSE LENGTH=1439