- Predicted Gene MLOC_55960
MLOC_55960 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 14.292 | 24.6752 | 21.8846 | 19.4097 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 21.2703 | 5.87881 | 8.14104 | 10.0495 |
| INF1 | Young developing inflorescences (5mm) | 27.3746 | 31.6355 | 29.1463 | 22.129 |
| INF2 | Developing inflorescences (1-1.5 cm) | 24.9139 | 28.1997 | 23.8899 | 25.8874 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 7.62047 | 13.7456 | 10.133 | 13.1215 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 34.7343 | 41.4162 | 26.6827 | 114.331 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 17.4961 | 17.7021 | 18.3099 | 15.4044 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 3.85625 | 3.54907 | 3.57774 | 7.71914 |
CDS Structure of MLOC_55960
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55960.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os02g40430.1 |
+3 |
0.0 |
1367 |
749/949 (79%) |
13102.m04505 protein HEAT repeat family protein, putative, expressed |
| TAIR PP10 |
AT2G20190.1 |
+3 |
0.0 |
939 |
530/952 (56%) |
| Symbols: ATCLASP, CLASP | CLIP-associated protein | chr2:8711862-8718813 REVERSE LENGTH=1439 |