MLOC_55945 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains52.446436.129735.087936.9437
LEAShoots from the seedlings (10 cm shoot stage)17.676914.036721.552613.2107
INF1Young developing inflorescences (5mm)50.227658.572360.841543.9143
INF2Developing inflorescences (1-1.5 cm)32.181838.774834.123136.44
ROORoots from the seedlings (10 cm shoot stage)44.256841.270140.147543.064
NODDeveloping tillers at six leaf stage, 3rd internode4.579813.584598.764511.5358
CAR5Developing grain, bracts removed (5 DPA)28.377935.550436.866231.2853
CAR15Developing grain, bracts removed (15 DPA)8.293036.725166.7186616.4761



CDS Structure of MLOC_55945






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55945.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373285NoneNoneNoneNone
MLOC_55945.1CUST_3520_PI427708080AvailableAvailablecontig_40407 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g40490.1 +3 1e-48 163 81/93 (87%) 13102.m04513 protein conserved hypothetical protein
TAIR PP10 AT5G39800.1 +3 3e-36 128 60/77 (78%) Mitochondrial ribosomal protein L27 | chr5:15935580-15936936 FORWARD LENGTH=94