MLOC_55943 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains42.842245.526744.449941.4571
LEAShoots from the seedlings (10 cm shoot stage)47.774840.778647.449936.3192
INF1Young developing inflorescences (5mm)42.20246.548343.603834.3804
INF2Developing inflorescences (1-1.5 cm)34.743337.918237.188536.2908
ROORoots from the seedlings (10 cm shoot stage)53.602764.951358.228968.3202
NODDeveloping tillers at six leaf stage, 3rd internode57.95464.183870.1668193.111
CAR5Developing grain, bracts removed (5 DPA)33.852838.28633.253431.2484
CAR15Developing grain, bracts removed (15 DPA)13.554314.362212.190228.445



CDS Structure of MLOC_55943






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55943.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354128NoneNoneNoneNone
MLOC_55943.1CUST_18125_PI427708080AvailableAvailablecontig_40406 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g02350.1 -3 0.0 618 317/333 (95%) 13107.m00159 protein casein kinase II subunit alpha-2, putative, expressed
TAIR PP10 AT3G50000.1 -3 0.0 596 304/333 (91%) | Symbols: CKA2, ATCKA2 | casein kinase II, alpha chain 2 | chr3:18534487-18536743 FORWARD LENGTH=403