MLOC_55936 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.849821.132316.456620.0362
LEAShoots from the seedlings (10 cm shoot stage)10.98216.293173.981556.36288
INF1Young developing inflorescences (5mm)17.694822.408929.925421.2942
INF2Developing inflorescences (1-1.5 cm)6.11577.784446.372048.07291
ROORoots from the seedlings (10 cm shoot stage)15.708628.273620.472934.6417
NODDeveloping tillers at six leaf stage, 3rd internode36.105535.34115.05349100.761
CAR5Developing grain, bracts removed (5 DPA)8.44688.134147.52458.49305
CAR15Developing grain, bracts removed (15 DPA)2.052962.542972.488765.91993



CDS Structure of MLOC_55936






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55936.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249501.1NoneNoneNoneNone
MLOC_55936.1CUST_3519_PI427708080AvailableAvailablecontig_40398 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g03290.1 -3 0.0 622 320/451 (71%) 13111.m00267 protein nucleoside-triphosphatase, putative, expressed
TAIR PP10 AT3G04080.1 -3 2e-132 397 201/400 (50%) | Symbols: ATAPY1, APY1 | apyrase 1 | chr3:1068068-1070917 REVERSE LENGTH=471