MLOC_55934 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.712817.381516.25816.8952
LEAShoots from the seedlings (10 cm shoot stage)15.07065.046783.745987.01352
INF1Young developing inflorescences (5mm)36.442132.297730.8828.9042
INF2Developing inflorescences (1-1.5 cm)24.816226.04323.494928.3257
ROORoots from the seedlings (10 cm shoot stage)7.0382810.509210.93412.7696
NODDeveloping tillers at six leaf stage, 3rd internode14.006413.862911.69146.8457
CAR5Developing grain, bracts removed (5 DPA)37.474435.244236.809136.888
CAR15Developing grain, bracts removed (15 DPA)201.371196.114195.272467.786



CDS Structure of MLOC_55934






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55934.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55934.1CUST_13451_PI427708080AvailableAvailablecontig_40397 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g17290.1 -2 0.0 1021 561/701 (80%) 13106.m01902 protein phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
TAIR PP10 AT2G03890.1 -2 0.0 676 398/665 (60%) | Symbols: ATPI4K GAMMA 7, UBDK GAMMA 7, PI4K GAMMA 7 | phosphoinositide 4-kinase gamma 7 | chr2:1186199-1188151 FORWARD LENGTH=650