MLOC_55924 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.93047.070997.938588.21658
LEAShoots from the seedlings (10 cm shoot stage)7.514267.857749.155076.50166
INF1Young developing inflorescences (5mm)8.008047.935388.922317.02744
INF2Developing inflorescences (1-1.5 cm)11.326711.580411.149112.5371
ROORoots from the seedlings (10 cm shoot stage)17.460913.098411.143715.3071
NODDeveloping tillers at six leaf stage, 3rd internode5.4492310.16089.6471431.4903
CAR5Developing grain, bracts removed (5 DPA)7.5553810.17039.629938.89144
CAR15Developing grain, bracts removed (15 DPA)2.556853.015142.810546.62169



CDS Structure of MLOC_55924






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55924.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354293NoneNoneNoneNone
MLOC_55924.3CUST_3517_PI427708080AvailableAvailablecontig_40393 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g10050.1 -3 4e-119 359 180/200 (90%) 13102.m01109 protein expressed protein
TAIR PP10 AT2G22370.1 -3 2e-99 307 145/200 (73%) unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:9501019-9502078 REVERSE LENGTH=219