MLOC_55912 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains27.056928.396628.184126.1045
LEAShoots from the seedlings (10 cm shoot stage)14.24189.315085.321467.35063
INF1Young developing inflorescences (5mm)38.281531.590926.672826.4136
INF2Developing inflorescences (1-1.5 cm)24.562322.156824.693325.2977
ROORoots from the seedlings (10 cm shoot stage)9.5870224.286237.048923.8882
NODDeveloping tillers at six leaf stage, 3rd internode7.349362.996797.257269.35076
CAR5Developing grain, bracts removed (5 DPA)24.325426.844825.244624.6741
CAR15Developing grain, bracts removed (15 DPA)6.776937.567935.2843315.9074



CDS Structure of MLOC_55912






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55912.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55912.1CUST_17750_PI427708080AvailableAvailablecontig_40386 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g69250.4 +3 2e-23 96 43/51 (84%) 13101.m07566 protein mitochondrial import receptor subunit TOM20, putative, expressed
TAIR PP10 AT5G40930.1 +3 7e-11 61 29/47 (62%) | Symbols: TOM20-4 | translocase of outer membrane 20-4 | chr5:16404523-16405825 FORWARD LENGTH=187