- Predicted Gene MLOC_55907
MLOC_55907 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 11.6288 | 13.0917 | 12.8389 | 12.4293 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 9.86312 | 11.6818 | 21.8151 | 12.006 |
| INF1 | Young developing inflorescences (5mm) | 33.5818 | 37.0531 | 39.2652 | 29.1 |
| INF2 | Developing inflorescences (1-1.5 cm) | 38.4541 | 40.8418 | 40.6811 | 41.6256 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 8.96878 | 14.9154 | 15.954 | 16.2869 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 3.84814 | 4.95085 | 4.8953 | 15.8388 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 19.1885 | 20.8055 | 20.8994 | 18.8771 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 13.2197 | 11.3503 | 11.3162 | 26.6974 |
CDS Structure of MLOC_55907
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55907.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os04g53700.1 |
+3 |
0.0 |
766 |
375/465 (81%) |
13104.m05536 protein zinc finger protein, putative, expressed |
| TAIR PP10 |
AT3G21820.1 |
+3 |
0.0 |
559 |
275/443 (62%) |
| Symbols: ATXR2, SDG36 | histone-lysine N-methyltransferase ATXR2 | chr3:7688629-7691444 REVERSE LENGTH=473 |
