MLOC_55891 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains61.9244.384346.744348.1881
LEAShoots from the seedlings (10 cm shoot stage)34.111233.390848.778330.6831
INF1Young developing inflorescences (5mm)61.498276.188484.446762.7058
INF2Developing inflorescences (1-1.5 cm)88.620887.454496.565697.2293
ROORoots from the seedlings (10 cm shoot stage)102.19957.302168.669773.3146
NODDeveloping tillers at six leaf stage, 3rd internode49.38371.4581112.706221.152
CAR5Developing grain, bracts removed (5 DPA)64.835779.494958.206966.1888
CAR15Developing grain, bracts removed (15 DPA)23.963918.450518.594249.6746



CDS Structure of MLOC_55891






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55891.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368360NoneNoneNoneNone
MLOC_55891.1CUST_3512_PI427708080AvailableAvailablecontig_40371 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g47870.1 +2 2e-67 209 91/92 (99%) 13102.m05403 protein anaphase-promoting complex subunit 11, putative, expressed
TAIR PP10 AT5G20570.1 +2 2e-66 206 90/92 (98%) | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | chr5:6956905-6958221 REVERSE LENGTH=118