MLOC_55888 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.40878.712939.9945411.3796
LEAShoots from the seedlings (10 cm shoot stage)28.05587.408469.9384413.14
INF1Young developing inflorescences (5mm)7.7192810.618310.16189.02929
INF2Developing inflorescences (1-1.5 cm)8.6277712.84627.1671912.379
ROORoots from the seedlings (10 cm shoot stage)27.541514.856512.510121.4953
NODDeveloping tillers at six leaf stage, 3rd internode3.160956.108366.695320.4722
CAR5Developing grain, bracts removed (5 DPA)14.679216.976312.254716.665
CAR15Developing grain, bracts removed (15 DPA)9.5748311.86146.8926625.9662



CDS Structure of MLOC_55888






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_55888.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_55888.2CUST_13444_PI427708080AvailableAvailablecontig_40370 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g55270.1 +2 1e-70 222 102/118 (86%) 13101.m05815 protein SGS domain containing protein, expressed
TAIR PP10 AT1G30070.1 +2 2e-58 189 83/118 (70%) SGS domain-containing protein | chr1:10546794-10548072 REVERSE LENGTH=222