- Predicted Gene MLOC_55888
MLOC_55888 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_55888_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_55888_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 14.4087 | 8.71293 | 9.99454 | 11.3796 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 28.0558 | 7.40846 | 9.93844 | 13.14 |
INF1 | Young developing inflorescences (5mm) | 7.71928 | 10.6183 | 10.1618 | 9.02929 |
INF2 | Developing inflorescences (1-1.5 cm) | 8.62777 | 12.8462 | 7.16719 | 12.379 |
ROO | Roots from the seedlings (10 cm shoot stage) | 27.5415 | 14.8565 | 12.5101 | 21.4953 |
NOD | Developing tillers at six leaf stage, 3rd internode | 3.16095 | 6.10836 | 6.6953 | 20.4722 |
CAR5 | Developing grain, bracts removed (5 DPA) | 14.6792 | 16.9763 | 12.2547 | 16.665 |
CAR15 | Developing grain, bracts removed (15 DPA) | 9.57483 | 11.8614 | 6.89266 | 25.9662 |
CDS Structure of MLOC_55888
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_55888.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g55270.1 |
+2 |
1e-70 |
222 |
102/118 (86%) |
13101.m05815 protein SGS domain containing protein, expressed |
TAIR PP10 |
AT1G30070.1 |
+2 |
2e-58 |
189 |
83/118 (70%) |
SGS domain-containing protein | chr1:10546794-10548072 REVERSE LENGTH=222 |